- Lee M, Wang WQ, and Yu H. 2006. Exploring supervised and unsupervised methods to detect topics in biomedical text. BMC Bioinformatics 7(1):140. link
- Yu H and Lee M. 2006. Accessing bioscience images from abstract sentences. Bioinformatics 22(14): e547-e556. link
- Yu H, Agarwal S, Johnston M, and Cohen A. 2009. Are figure legends sufficient? Evaluating the contribution of associated text to biomedical figure comprehension. BMC Journal of Biomedical Discovery and Collaboration.4:1. link
- Agarwal S and Yu H. 2009. Automatically classifying sentences in full-text biomedical articles into Introduction, Methods, Results, and Discussion. Bioinformatics 25(23):3174-80. link
- Kim D and Yu H. 2010. Automatic figure classification in bioscience literature. Journal of Biomedical Informatics (submitted).
- Agarwal S and Yu H. 2010. Biomedical negation scope detection with conditional random fields. Journal of American Medical Informatics Association. link
- Yu H, Liu FF, Ramesh BP. 2010. Figure ranking, novel user interface and natural language processing approaches for automatic figure ranking. PLoS ONE. link
- Kim D and Yu H. 2010. Figure text detection in bioscience literature. PLoS ONE (accepted).
- Yu H and Lee M. 2006. BioEx: A novel user-interface that accesses images from abstract sentences. The Annual Conference of the North American Chapter of the Association for Computational Linguistics (NAACL-HLT), New York. link (pdf)
- Yu H. 2006. Towards answering biological questions with experimental evidence: Automatically identifying text that summarize image content in full-text articles. American Medical Informatics Association (AMIA) Fall Symposium, Washington, DC. link
- Rafkind B, Lee M, Chang SF, and Yu H. 2006. Exploring text and image features to classify images in bioscience literature. The Annual Conference of the North American Chapter of the Association for Computational Linguistics (NAACL-HLT) Linking Natural Language Processing and Biology: Towards Deeper Biological Literature Analysis (BioNLP), New York. link
- Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB. 2007. New frontiers in biomedical text mining. Pacific Symposium on Biocomputing (PSB), Big Island of Hawaii. link (pdf)
- Cohen KB, Yu H, Bourne PE, and Hirschman L. 2008. Translating biology: text mining tools that work. Pacific Symposium on Biocomputing (PSB), Big Island of Hawaii. link (pdf)
- Agarwal S and Yu H. 2009. Automatically classifying sentences in full-text biomedical articles into Introduction, Methods, Results, and Discussion. American Medical Informatics Association (AMIA) Summit on Translational Bioinformatics, San Francisco, California. link (pdf slides)
- Agarwal S and Yu H. 2009. Automatically generating structured text summaries for figures in biomedical literature. American Medical Informatics Association (AMIA) Fall Symposium, San Francisco, California. link
- Kim D and Yu H. 2009. Hierarchical image classification in the bioscience literature. American Medical Informatics Association (AMIA) Fall Symposium, San Francisco, California. link
- Agarwal S and Yu H. 2009. Adding Automatically Generated Summaries to Biomedical Figures to Improve Literature Search. Presented at AMIA 2009 Annual Symposium, San Francisco, CA
- Agarwal S and Yu H. 2010. Improvements in the Figure Search and Summarization System. To be presented at AMIA 2010 Annual Symposium, Washington, DC
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